You should to the propedit command in the trunk, and modify the genfit line using now:
https://svn.code.sf.net/p/genfit/code/core
Moreover, in GenfitTools/trackrep you have to do again the propedit command and modify all the lines with:
https://svn.code.sf.net/p/genfit/code/LSLtrackRep
Since the genfit repository has changed in the meantime. And then the svn update -r 11867 from pandaroot folder.
About the problems with the base packages, in theory they should work, the link should be the same.
Are you sure you want to use code 4 years old?