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Re: segmentation violation in pid macro [message #13527 is a reply to message #13256] Fri, 25 May 2012 16:05 Go to previous messageGo to previous message
MartinJGaluska is currently offline  MartinJGaluska
Messages: 203
Registered: March 2010
Location: Germany
first-grade participant
From: *physik.uni-giessen.de
Hello,

I have just encountered what seems to be the exact same problem in run_pid_stt.C (from macro/pid) in revision 15614, but I have read that the problem was already fixed, so maybe I am doing something wrong or it is a different problem.

I am simulating X(as Psi')-> j/psi pi pi with j/psi -> e+ e-.

I call the macro with
root run_pid_stt.C


Here is my error output from root (which looks very similar to what Albrecht posted, I believe):

ROOT 5.32/00 (tags/v5-32-00@42375, Feb 02 2012, 16:46:50 on linuxx8664gcc)

CINT/ROOT C/C++ Interpreter version 5.18.00, July 2, 2010
Type ? for help. Commands must be C++ statements.
Enclose multiple statements between { }.
root [0] 
Processing run_pid_stt.C...
FairRootManager::OpenOutFile("pid_sttcombi.root")
Info in (PndGeoHandling::Instance): Making a new instance using the framework.
[INFO   ] The input consists out of the following trees and files: 
[INFO   ]  - cbmsim 
[INFO   ]     - points_sttcombi.root 
[INFO   ]  - FriendTree_1 
[INFO   ]     - digi_sttcombi.root 
[INFO   ]  - FriendTree_2 
[INFO   ]     - reco_sttcombi.root 
[INFO   ] Parameter and input file are available, Assure that basic info is there for the run! 
[INFO   ] The number of entries in chain is 100 

*************************************************************
     initialisation for run id 1421926020
*************************************************************
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CloseGeometry>: Geometry loaded from file...
Info in <TGeoManager::SetTopVolume>: Top volume is cave. Master volume is cave
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: 2015817 nodes/ 5748 volume UID's in FAIR geometry
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
Container FairBaseParSet initialized from ROOT file.
 -I container name PndPidCorrPar
 -I container name PndEmcGeoPar
 -I container name PndEmcErrorMatrixPar
 -I container name PndGeoSttPar

*************************************************************
     initialisation for run id 1421926020
*************************************************************
Container PndSensorNamePar initialized from ROOT file.
PndPidCorrPar initialized from Ascii file
Container PndEmcGeoPar initialized from ROOT file.
[ERROR  ] init() PndEmcErrorMatrixPar  not initialized 
Container PndGeoSttPar initialized from ROOT file.
Error in <FairRuntimeDb::initContainers()>: Error occured during initialization
PndFieldCreator::SetParm() 0x263c3e50

*************************************************************
     initialisation for run id 1421926020
*************************************************************
PndPidCorrPar initialized from Ascii file
[ERROR  ] init() PndEmcErrorMatrixPar  not initialized 
Container PndMultiFieldPar initialized from ROOT file.
Error in <FairRuntimeDb::initContainers()>: Error occured during initialization
OBJ: PndTransPar	PndTransPar	Trans. Field parameter container
OBJ: PndDipole1Par	PndDipole1Par	Dipole Field parameter container
OBJ: PndDipole2Par	PndDipole2Par	Dipole Field parameter container
OBJ: PndSolenoid1Par	PndSolenoid1Par	Solenoid 1st region parameter container
OBJ: PndSolenoid2Par	PndSolenoid2Par	Solenoid 2nd region parameter container
OBJ: PndSolenoid3Par	PndSolenoid3Par	Solenoid 3rd region parameter container
OBJ: PndSolenoid4Par	PndSolenoid4Par	Solenoid 4th region parameter container
[INFO   ] PndFieldMap: Reading field map from ROOT file  /home/panda/pandaroot_sep12/trunk/input/TransMap.0890.root  
[INFO   ] PndFieldMap: Reading field map from ROOT file  /home/panda/pandaroot_sep12/trunk/input/DipoleMap1.0890.root  
[INFO   ] PndFieldMap: Reading field map from ROOT file  /home/panda/pandaroot_sep12/trunk/input/DipoleMap2.0890.root  
[INFO   ] PndFieldMap: Reading field map from ROOT file  /home/panda/pandaroot_sep12/trunk/input/SolenoidMap1.root  
[INFO   ] PndFieldMap: Reading field map from ROOT file  /home/panda/pandaroot_sep12/trunk/input/SolenoidMap2.root  
[INFO   ] PndFieldMap: Reading field map from ROOT file  /home/panda/pandaroot_sep12/trunk/input/SolenoidMap3.root  
[INFO   ] PndFieldMap: Reading field map from ROOT file  /home/panda/pandaroot_sep12/trunk/input/SolenoidMap4.root  
------------------------FairGeane::Init ()------------------------------
Loading Geant3 libraries ...
Loading Geant3 libraries ... finished

 MZSTOR.  ZEBRA table base TAB(0) in /MZCC/ at adr   432686447    19CA456F HEX

 MZSTOR.  Initialize Store  0  in /GCBANK/
          with Store/Table at absolute adrs   432709485   432686447
                                        HEX    19CA9F6D    19CA456F
                                        HEX        560A           0
                              relative adrs       22026           0
          with     1 Str. in     2 Links in   5300 Low words in 4999970 words.
          This store has a fence of   16 words.

 MZLOGL.  Set Log Level 0 for store  0
1*****  GEANT Version  3.21/11 Released on 100298
0*****  Correction Cradle Version  0.1100

 MZDIV.   Initialize Division  Constant  in Store  0
          NW/NWMAX=   20004000000,  MODE/KIND=  1  2
          Division 20 initialized.

 MZLINK.  Initialize Link Area  /GCLINK/  for Store  0 NL/NS=    20    20

 MZLINK.  Initialize Link Area  /GCSLNK/  for Store  0 NL/NS=   100   100
-I- G3Config: Geant3 with TGeo has been created for Geane.
-I- Geane.C: NOPRNT flag set to 1
-I- Geane.C: IERR flags are not printed. If you want to switch them on, please set fErtrio1->noprnt = 0 in Geane.C
Energy straggling area parameter from user set to: 0.999

 Calculating cross section tables, see gphysi.dat for more information

 Cross section calculation concluded successfully
I- FairGeane::FairGeane:  Geane is Initialized 
-I- PndPidCorrelator::Init: Using STTHit
-I- PndPidCorrelator::Init: Using MVDHit
[INFO   ]  Branch: TofHit  not found in Tree  
[INFO   ]  Branch: TofHit  not found in Tree  
-W- PndPidCorrelator::Init: No TofHit array!
-I- PndPidCorrelator::Init: Using EmcCluster
-I- PndPidCorrelator::Init: Using DrcHit
-I- PndPidCorrelator::Init: Using DskParticle
-I- PndPidCorrelator::Init: Using MdtHit
-I- PndPidCorrelator::Init: Using MdtTrk

---------------------------------------------
-----  PndPidCorrPar  -----
--  Context/Purpose:  TestDefaultContext
---------------------------------------------
TofRadius: Float_t   43.6 
TofCut: Float_t   2500 
Emc12Thr: Float_t   0.02 
Emc12Radius: Float_t   63 
Emc12Cut: Float_t   2500 
MdtRadius: Float_t   155 
MdtCut: Float_t   2500 
DrcRadius: Float_t   49 
DrcCut: Float_t   1 
---------------------------------------------

-I- PndPidCorrelator::Init: Using Geane for Track propagation
-I- PndPidCorrelator::Init: No PID set -> Using default PION hypothesis
Error matrix for EMC geometry: 1 does not exist. Default is used.
EMC error matrix is read from: /home/panda/pandaroot_sep12/trunk/input/emc_error_matrix_default.root
EMC photon calibration parameters are read succesfully
-I- PndPidCorrelator::Init: Success!
-I- PndPidIdealAssociatorTask::Init: Success!
InitStatus PndPidMvdAssociatorTask::Init()
-I- PndPidMvdAssociatorTask::Init: Success!
InitStatus PndPidMdtHCAssociatorTask::Init()
-I- PndPidMdtHCAssociatorTask::Init: Success!
InitStatus PndPidDrcAssociatorTask::Init()
-I- PndPidDrcAssociatorTask::Init: Success!
InitStatus PndPidDiscAssociatorTask::Init()
-I- PndPidDiscAssociatorTask::Init: Success!
-I- PndPidSttAssociatorTask: using default mass hypo bands (muon)
-I- PndPidSttAssociatorTask::Init: Intialization successfull
InitStatus PndPidEmcBayesAssociatorTask::Init()
-I- PndPidEmcBayesAssociatorTask::SetupEnvironment:File used=BayesEMC.root-I- PndPidEmcBayesAssociatorTask::Init: Success!!
[INFO   ] The number of entries in chain is 100 
 =====   PndPidCorrelator - Event: 1 - Number of tracks for pid 5 - Number of EMC Cluster for pid 17
[INFO   ] The number of entries in chain is 100 
 =====   PndPidCorrelator - Event: 2 - Number of tracks for pid 3 - Number of EMC Cluster for pid 13
-W- PndPidCorrelator::GetMvdInfo: Track perpendicular to MVD strip/pixel! Not added to MVD eloss
-W- PndPidCorrelator::GetMvdInfo: Track perpendicular to MVD strip/pixel! Not added to MVD eloss
-W- PndPidCorrelator::GetMvdInfo: Track perpendicular to MVD strip/pixel! Not added to MVD eloss
-W- PndPidCorrelator::GetMvdInfo: Track perpendicular to MVD strip/pixel! Not added to MVD eloss
-W- PndPidCorrelator::GetMvdInfo: Track perpendicular to MVD strip/pixel! Not added to MVD eloss

 *** Break *** segmentation violation



===========================================================
There was a crash.
This is the entire stack trace of all threads:
===========================================================
#0  0x000000300409a115 in waitpid () from /lib64/libc.so.6
#1  0x000000300403c481 in do_system () from /lib64/libc.so.6
#2  0x00002b2d53f3f902 in TUnixSystem::StackTrace() ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#3  0x00002b2d53f3c79a in TUnixSystem::DispatchSignals(ESignals) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#4  <signal handler called>
#5  0x00002b2d5fb42d35 in PndEmcCluster::Maxima (this=0x2a4c42a0, 
    digiArray=0x1ded4fc0)
    at /home/panda/pandaroot_sep12/trunk/emc/EmcData/PndEmcCluster.cxx:212
#6  0x00002b2d5fb4c8f3 in PndEmcClusterEnergySums::E1 (this=0x7fffcac33bf0)
    at /home/panda/pandaroot_sep12/trunk/emc/EmcData/PndEmcClusterEnergySums.cxx:89
#7  0x00002b2d651a24f6 in PndPidCorrelator::ConstructNeutralCandidate (
    this=0x1d94e130)
    at /home/panda/pandaroot_sep12/trunk/pid/PidCorr/PndPidCorrelator.cxx:715
#8  0x00002b2d651a399f in PndPidCorrelator::Exec (this=0x1d94e130, 
    option=0x2b2d5d656460 "")
    at /home/panda/pandaroot_sep12/trunk/pid/PidCorr/PndPidCorrelator.cxx:550
#9  0x00002b2d53ec43a9 in TTask::ExecuteTasks(char const*) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#10 0x00002b2d53ec3dfb in TTask::ExecuteTask(char const*) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#11 0x00002b2d5d579518 in FairRunAna::Run (this=0x1c7d3090, Ev_start=0, 
    Ev_end=100) at /home/panda/pandaroot_sep12/trunk/base/FairRunAna.cxx:544
#12 0x00002b2d5d5ec39e in G__FairDict_986_0_6 (result7=0x7fffcac3fdf0, 
    funcname=0x1c7ce1f0 "", libp=0x7fffcac353e0, hash=0)
    at /home/panda/pandaroot_sep12/build/base/FairDict.cxx:14749
#13 0x00002b2d546f471d in Cint::G__ExceptionWrapper(int (*)(G__value*, char const*, G__param*, int), G__value*, char*, G__param*, int) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#14 0x00002b2d547a5a90 in G__execute_call ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#15 0x00002b2d547a74ea in G__call_cppfunc ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#16 0x00002b2d547804b0 in G__interpret_func ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#17 0x00002b2d5476f8ee in G__getfunction ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#18 0x00002b2d5485f546 in G__getstructmem(int, G__FastAllocString&, char*, int, char*, int*, G__var_array*, int) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#19 0x00002b2d54855346 in G__getvariable ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#20 0x00002b2d5474269c in G__getitem ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#21 0x00002b2d5474ce21 in G__getexpr ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#22 0x00002b2d547d4adf in G__exec_statement ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#23 0x00002b2d5472e7b5 in G__exec_tempfile_core ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#24 0x00002b2d5472eaeb in G__exec_tempfile ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#25 0x00002b2d547e7054 in G__process_cmd ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCint.so.5.32
#26 0x00002b2d53ef955d in TCint::ProcessLine(char const*, TInterpreter::EErrorCode*) () from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#27 0x00002b2d53ef9033 in TCint::ProcessLineSynch(char const*, TInterpreter::EErrorCode*) () from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#28 0x00002b2d53e5645e in TApplication::ExecuteFile(char const*, int*, bool) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#29 0x00002b2d53e539fd in TApplication::ProcessLine(char const*, bool, int*) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#30 0x00002b2d5504b59c in TRint::Run(bool) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libRint.so.5.32
#31 0x000000000040100d in main ()
===========================================================


The lines below might hint at the cause of the crash.
If they do not help you then please submit a bug report at
http://root.cern.ch/bugs. Please post the ENTIRE stack trace
from above as an attachment in addition to anything else
that might help us fixing this issue.
===========================================================
#5  0x00002b2d5fb42d35 in PndEmcCluster::Maxima (this=0x2a4c42a0, 
    digiArray=0x1ded4fc0)
    at /home/panda/pandaroot_sep12/trunk/emc/EmcData/PndEmcCluster.cxx:212
#6  0x00002b2d5fb4c8f3 in PndEmcClusterEnergySums::E1 (this=0x7fffcac33bf0)
    at /home/panda/pandaroot_sep12/trunk/emc/EmcData/PndEmcClusterEnergySums.cxx:89
#7  0x00002b2d651a24f6 in PndPidCorrelator::ConstructNeutralCandidate (
    this=0x1d94e130)
    at /home/panda/pandaroot_sep12/trunk/pid/PidCorr/PndPidCorrelator.cxx:715
#8  0x00002b2d651a399f in PndPidCorrelator::Exec (this=0x1d94e130, 
    option=0x2b2d5d656460 "")
    at /home/panda/pandaroot_sep12/trunk/pid/PidCorr/PndPidCorrelator.cxx:550
#9  0x00002b2d53ec43a9 in TTask::ExecuteTasks(char const*) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#10 0x00002b2d53ec3dfb in TTask::ExecuteTask(char const*) ()
   from /home/panda/fairsoft/jan12/tools/root/lib/libCore.so.5.32
#11 0x00002b2d5d579518 in FairRunAna::Run (this=0x1c7d3090, Ev_start=0, 
    Ev_end=100) at /home/panda/pandaroot_sep12/trunk/base/FairRunAna.cxx:544
===========================================================
 
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