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Simulation on Kronos [message #19333] Thu, 16 June 2016 09:57 Go to next message
Jennifer Pütz is currently offline  Jennifer Pütz
Messages: 47
Registered: April 2015
Location: FZ Juelich
continuous participant
From: *ikp.kfa-juelich.de
Hi everyone,

due to the fact that Prometheus will be shut down at the end of June, I would like to provide you a submit script for Kronos (see attachment). This submit script is similar to the script for Prometheus (~/pandaroot/trunk/source/macro/prod/job_prod.sge). There is no need to change the macros from ~/pandaroot/trunk/source/macro/prod.

The script is easily submited by using the command:

sbatch job_prod_kronos.sh <prefix> <nevts> <dec-file> <mom>


If you want to run more than one job in parallel, use e.g.

sbatch --array=1-20  job_prod_kronos.sh <prefix> <nevts> <dec-file> <mom>


To look up the status of your job use

squeue -u <username>
or
watch squeue -u <username>
(This command updates the window every 2s.)

For further information see also https://wiki.gsi.de/foswiki/bin/view/Linux/SlurmUsage

You can even run a short test job for debugging (max. 20 minutes):

sbatch --partition=debug  job_prod_kronos.sh <prefix> <nevts> <dec-file> <mom>


I hope this is useful for some of you.

Cheers,
Jenny
Re: Simulation on Kronos [message #19334 is a reply to message #19333] Thu, 16 June 2016 10:04 Go to previous messageGo to next message
Klaus Götzen is currently offline  Klaus Götzen
Messages: 293
Registered: June 2006
Location: GSI
first-grade participant
From: *gsi.de
Dear Jenny,


thanks for your input there!

I'd just like to mention, that I'm currently working on all scripts/macros in macro/prod to make them consistent with macro/master setup, and update also functionality for automatic resubmission etc. So you actually don't need to put too much effort in changing things there, I hope I have everything in place very soon!


Best regards,
Klaus
Re: Simulation on Kronos [message #19337 is a reply to message #19333] Fri, 17 June 2016 14:37 Go to previous messageGo to next message
Klaus Götzen is currently offline  Klaus Götzen
Messages: 293
Registered: June 2006
Location: GSI
first-grade participant
From: *gsi.de
Dear all,


I just updated the macros and scripts in macro/prod to conveniently do simulations/analysis and also submit jobs to the Kronos cluster at GSI. The corresponding README

https://subversion.gsi.de/trac/fairroot/browser/pandaroot/trunk/macro/pr od/README

should contain all necessary information. Please try and let me know any problems.


Best regards,
Klaus

Re: Simulation on Kronos [message #19338 is a reply to message #19337] Mon, 20 June 2016 18:34 Go to previous message
Klaus Götzen is currently offline  Klaus Götzen
Messages: 293
Registered: June 2006
Location: GSI
first-grade participant
From: *gsi.de
Hi all,


I just prepared a wiki-page explaining the usage of kronos/nyx:

https://panda-wiki.gsi.de/foswiki/bin/view/Computing/PandaRootSimulation Kronos

Let me know about missing information or bugs...


Best regards,
Klaus
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